ENSDARG00000016011


Danio rerio

Features
Gene ID: ENSDARG00000016011
  
Biological name :gpcpd1
  
Synonyms : glycerophosphocholine phosphodiesterase 1 / gpcpd1
  
Possible biological names infered from orthology : Q8C0L9 / Q9NPB8
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 45669176
Gene end: 45722895
  
Corresponding Affymetrix probe sets: Dr.2445.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000011048
Ensembl peptide - ENSDARP00000107604
Ensembl peptide - ENSDARP00000127231
NCBI entrez gene - 492483     See in Manteia.
RefSeq - NM_001110523
RefSeq - XM_005160872
RefSeq Peptide - NP_001103993
swissprot - Q1LVM1
swissprot - U3JAG3
swissprot - F6NSA7
ZFIN ID - ZDB-GENE-060503-472
Ensembl - ENSDARG00000016011
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GPCPD1ENSGALG00000009130Gallus gallus
 GPCPD1ENSG00000125772Homo sapiens
 Gpcpd1ENSMUSG00000027346Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002044  Carbohydrate binding module family 20
 IPR013783  Immunoglobulin-like fold
 IPR013784  Carbohydrate-binding-like fold
 IPR017946  PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
 IPR030395  Glycerophosphodiester phosphodiesterase domain
 IPR033506  Glycerophosphodiester phosphodiesterase Gde1
 IPR034839  Glycerophosphocholine phosphodiesterase GPCPD1, CBM20 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0030643 cellular phosphate ion homeostasis IBA
 biological_processGO:0046475 glycerophospholipid catabolic process IBA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005623 cell IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0008889 glycerophosphodiester phosphodiesterase activity IBA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0047389 glycerophosphocholine phosphodiesterase activity IBA
 molecular_functionGO:2001070 starch binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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