ENSG00000125772


Homo sapiens

Features
Gene ID: ENSG00000125772
  
Biological name :GPCPD1
  
Synonyms : glycerophosphocholine phosphodiesterase 1 / GPCPD1 / Q9NPB8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p12.3
Gene start: 5544404
Gene end: 5611026
  
Corresponding Affymetrix probe sets: 224826_at (Human Genome U133 Plus 2.0 Array)   224835_at (Human Genome U133 Plus 2.0 Array)   230492_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000368305
Ensembl peptide - ENSP00000488635
Ensembl peptide - ENSP00000487616
Ensembl peptide - ENSP00000396720
NCBI entrez gene - 56261     See in Manteia.
OMIM - 614124
RefSeq - XM_005260758
RefSeq - XM_006723596
RefSeq - XM_005260761
RefSeq - NM_019593
RefSeq Peptide - NP_062539
swissprot - Q9NPB8
swissprot - A0A0J9YY12
swissprot - H0Y565
swissprot - A0A0J9YVP8
Ensembl - ENSG00000125772
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gpcpd1ENSDARG00000016011Danio rerio
 GPCPD1ENSGALG00000009130Gallus gallus
 Gpcpd1ENSMUSG00000027346Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002044  Carbohydrate binding module family 20
 IPR013783  Immunoglobulin-like fold
 IPR013784  Carbohydrate-binding-like fold
 IPR017946  PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
 IPR030395  Glycerophosphodiester phosphodiesterase domain
 IPR033506  Glycerophosphodiester phosphodiesterase Gde1
 IPR034839  Glycerophosphocholine phosphodiesterase GPCPD1, CBM20 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0030643 cellular phosphate ion homeostasis IBA
 biological_processGO:0046475 glycerophospholipid catabolic process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0008889 glycerophosphodiester phosphodiesterase activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0047389 glycerophosphocholine phosphodiesterase activity IEA
 molecular_functionGO:2001070 starch binding IEA


Pathways (from Reactome)
Pathway description
Hydrolysis of LPC
Hydrolysis of LPE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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