ENSMUSG00000027346


Mus musculus

Features
Gene ID: ENSMUSG00000027346
  
Biological name :Gpcpd1
  
Synonyms : glycerophosphocholine phosphodiesterase 1 / Gpcpd1 / Q8C0L9
  
Possible biological names infered from orthology : Q9NPB8
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: F2
Gene start: 132529082
Gene end: 132587729
  
Corresponding Affymetrix probe sets: 10487945 (MoGene1.0st)   1429144_at (Mouse Genome 430 2.0 Array)   1429639_at (Mouse Genome 430 2.0 Array)   1437953_at (Mouse Genome 430 2.0 Array)   1458701_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000105769
Ensembl peptide - ENSMUSP00000105763
Ensembl peptide - ENSMUSP00000116156
Ensembl peptide - ENSMUSP00000122751
Ensembl peptide - ENSMUSP00000117217
Ensembl peptide - ENSMUSP00000116949
Ensembl peptide - ENSMUSP00000116457
Ensembl peptide - ENSMUSP00000028822
Ensembl peptide - ENSMUSP00000062221
Ensembl peptide - ENSMUSP00000105762
NCBI entrez gene - 74182     See in Manteia.
MGI - MGI:104898
RefSeq - XM_017319295
RefSeq - NM_001291050
RefSeq - NM_001291051
RefSeq - NM_001291052
RefSeq - NM_001355648
RefSeq - NM_001355649
RefSeq - NM_001355650
RefSeq - NM_001355651
RefSeq - NM_001355652
RefSeq - NM_027096
RefSeq - NM_028802
RefSeq - XM_006500274
RefSeq - XM_006500275
RefSeq - XM_006500276
RefSeq - XM_006500277
RefSeq - XM_006500279
RefSeq - XM_006500280
RefSeq - XM_011239809
RefSeq - XM_017319293
RefSeq - XM_017319294
RefSeq - NM_001042672
RefSeq Peptide - NP_001277979
RefSeq Peptide - NP_001342577
RefSeq Peptide - NP_001342578
RefSeq Peptide - NP_001342579
RefSeq Peptide - NP_001342580
RefSeq Peptide - NP_001342581
RefSeq Peptide - NP_081372
RefSeq Peptide - NP_083078
RefSeq Peptide - NP_001036137
RefSeq Peptide - NP_001277980
RefSeq Peptide - NP_001277981
swissprot - D6RHB5
swissprot - D6RGT7
swissprot - B0R058
swissprot - F6YDB7
swissprot - A2AMD7
swissprot - Q8C0L9
swissprot - A2AMD6
swissprot - D6RHS8
Ensembl - ENSMUSG00000027346
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gpcpd1ENSDARG00000016011Danio rerio
 GPCPD1ENSGALG00000009130Gallus gallus
 GPCPD1ENSG00000125772Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002044  Carbohydrate binding module family 20
 IPR013783  Immunoglobulin-like fold
 IPR013784  Carbohydrate-binding-like fold
 IPR017946  PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
 IPR030395  Glycerophosphodiester phosphodiesterase domain
 IPR033506  Glycerophosphodiester phosphodiesterase Gde1
 IPR034839  Glycerophosphocholine phosphodiesterase GPCPD1, CBM20 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006629 lipid metabolic process IEA
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0030643 cellular phosphate ion homeostasis IBA
 biological_processGO:0046475 glycerophospholipid catabolic process IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0008081 phosphoric diester hydrolase activity IEA
 molecular_functionGO:0008889 glycerophosphodiester phosphodiesterase activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0047389 glycerophosphocholine phosphodiesterase activity IMP
 molecular_functionGO:2001070 starch binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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