ENSDARG00000016463


Danio rerio

Features
Gene ID: ENSDARG00000016463
  
Biological name :trappc6b
  
Synonyms : trafficking protein particle complex 6b / trappc6b
  
Possible biological names infered from orthology : Q86SZ2 / Q9D289 / Trafficking protein particle complex subunit 6B
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 32021803
Gene end: 32027198
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000006381
NCBI entrez gene - 450008     See in Manteia.
RefSeq - NM_001006029
RefSeq Peptide - NP_001006029
swissprot - F1QMV3
ZFIN ID - ZDB-GENE-041010-122
Ensembl - ENSDARG00000016463
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRAPPC6BENSGALG00000010157Gallus gallus
 Q86SZ2ENSG00000182400Homo sapiens
 Q9D289ENSMUSG00000020993Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trappc6bl / trafficking protein particle complex 6b-like / O75865* / Q78XR0* / TRAPPC6A* / trafficking protein particle complex 6A*ENSDARG0000003317172


Protein motifs (from Interpro)
Interpro ID Name
 IPR007194  Transport protein particle (TRAPP) component
 IPR024096  NO signalling/Golgi transport ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 cellular_componentGO:0005801 cis-Golgi network IBA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0030008 TRAPP complex IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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