ENSDARG00000033171


Danio rerio

Features
Gene ID: ENSDARG00000033171
  
Biological name :trappc6bl
  
Synonyms : trafficking protein particle complex 6b-like / trappc6bl
  
Possible biological names infered from orthology : O75865 / Q78XR0 / trafficking protein particle complex 6A / TRAPPC6A
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 14076004
Gene end: 14083140
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000119425
Ensembl peptide - ENSDARP00000124070
Ensembl peptide - ENSDARP00000121289
Ensembl peptide - ENSDARP00000043491
NCBI entrez gene - 393634     See in Manteia.
RefSeq - NM_200661
RefSeq Peptide - NP_956955
swissprot - E9QC60
swissprot - F8W3I6
swissprot - E9QEY3
swissprot - Q6NUY4
ZFIN ID - ZDB-GENE-040426-1602
Ensembl - ENSDARG00000033171
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O75865ENSG00000007255Homo sapiens
 Q78XR0ENSMUSG00000002043Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
trappc6b / trafficking protein particle complex 6b / Q86SZ2* / Q9D289* / Trafficking protein particle complex subunit 6B *ENSDARG0000001646370


Protein motifs (from Interpro)
Interpro ID Name
 IPR007194  Transport protein particle (TRAPP) component
 IPR024096  NO signalling/Golgi transport ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 cellular_componentGO:0005801 cis-Golgi network IBA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0030008 TRAPP complex IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr