ENSMUSG00000002043


Mus musculus

Features
Gene ID: ENSMUSG00000002043
  
Biological name :Trappc6a
  
Synonyms : Q78XR0 / trafficking protein particle complex 6A / Trappc6a
  
Possible biological names infered from orthology : O75865
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A3
Gene start: 19508395
Gene end: 19516145
  
Corresponding Affymetrix probe sets: 10550715 (MoGene1.0st)   1417034_at (Mouse Genome 430 2.0 Array)   1460054_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000104095
Ensembl peptide - ENSMUSP00000119036
Ensembl peptide - ENSMUSP00000120406
Ensembl peptide - ENSMUSP00000002112
Ensembl peptide - ENSMUSP00000116737
NCBI entrez gene - 67091     See in Manteia.
MGI - MGI:1914341
RefSeq - NM_025960
RefSeq - NM_001331181
RefSeq Peptide - NP_001318110
RefSeq Peptide - NP_080236
swissprot - Q78XR0
swissprot - D6RD01
swissprot - F6VKM0
Ensembl - ENSMUSG00000002043
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc6blENSDARG00000033171Danio rerio
 O75865ENSG00000007255Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9D289 / Trappc6b / Trafficking protein particle complex subunit 6B / Q86SZ2* / trafficking protein particle complex 6B*ENSMUSG0000002099354


Protein motifs (from Interpro)
Interpro ID Name
 IPR007194  Transport protein particle (TRAPP) component
 IPR024096  NO signalling/Golgi transport ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0043473 pigmentation IMP
 biological_processGO:0048193 Golgi vesicle transport IEA
 biological_processGO:1903232 melanosome assembly IMP
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005801 cis-Golgi network IBA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0030008 TRAPP complex IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000372 irregular coat pigmentation "uneven coloration of the hair" [J:65030]
Show

Allelic Composition: H2-DMatm2Liz/H2-DMatm2Liz
Genetic Background: involves: C57BL/6 * C57BL/10 * C57BR * CBA

 MP:0005075 abnormal melanosome morphology "anomalous structure of these tissue-specific cytoplasmic organelles within which melanin pigments are synthesized and stored" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, J:5346]
Show

Allelic Composition: H2-DMatm2Liz/H2-DMatm2Liz
Genetic Background: involves: C57BL/6 * C57BL/10 * C57BR * CBA

 MP:0005103 abnormal retinal pigmentation "anomalous coloring of the thin layer of neural tissue lining the back of the eyeball which contains visual receptors " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: H2-DMatm2Liz/H2-DMatm2Liz
Genetic Background: involves: C57BL/6 * C57BL/10 * C57BR * CBA

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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