ENSMUSG00000020993


Mus musculus

Features
Gene ID: ENSMUSG00000020993
  
Biological name :Trappc6b
  
Synonyms : Q9D289 / Trafficking protein particle complex subunit 6B / Trappc6b
  
Possible biological names infered from orthology : Q86SZ2 / trafficking protein particle complex 6B
  
Species: Mus musculus
  
Chr. number: 12
Strand: -1
Band: C1
Gene start: 59043092
Gene end: 59061472
  
Corresponding Affymetrix probe sets: 10400538 (MoGene1.0st)   1428177_at (Mouse Genome 430 2.0 Array)   1428178_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000021380
Ensembl peptide - ENSMUSP00000151903
Ensembl peptide - ENSMUSP00000151772
Ensembl peptide - ENSMUSP00000151733
Ensembl peptide - ENSMUSP00000151224
NCBI entrez gene - 78232     See in Manteia.
MGI - MGI:1925482
RefSeq - NM_001306217
RefSeq - NM_001306218
RefSeq - NM_030057
RefSeq Peptide - NP_084333
RefSeq Peptide - NP_001293146
RefSeq Peptide - NP_001293147
swissprot - Q9D289
swissprot - A0A1W2P7S5
swissprot - A0A1W2P7N0
swissprot - A0A1W2P6E6
swissprot - A0A1W2P836
Ensembl - ENSMUSG00000020993
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc6bENSDARG00000016463Danio rerio
 TRAPPC6BENSGALG00000010157Gallus gallus
 Q86SZ2ENSG00000182400Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q78XR0 / Trappc6a / trafficking protein particle complex 6A / O75865*ENSMUSG0000000204354


Protein motifs (from Interpro)
Interpro ID Name
 IPR007194  Transport protein particle (TRAPP) component
 IPR024096  NO signalling/Golgi transport ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0043087 regulation of GTPase activity IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005801 cis-Golgi network IBA
 cellular_componentGO:0005802 trans-Golgi network IBA
 cellular_componentGO:0030008 TRAPP complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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