ENSDARG00000016514


Danio rerio

Features
Gene ID: ENSDARG00000016514
  
Biological name :gtf2h2
  
Synonyms : general transcription factor IIH, polypeptide 2 / gtf2h2
  
Possible biological names infered from orthology : general transcription factor IIH subunit 2 / GTF2H2C / GTF2H2 family member C / Q13888 / Q6P1K8 / Q9JIB4 / ral transcription factor IIH subunit 2
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 26221011
Gene end: 26233068
  
Corresponding Affymetrix probe sets: Dr.1630.1.S1_at (Zebrafish Array)   NM_201581_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000018901
NCBI entrez gene - 323239     See in Manteia.
RefSeq - NM_201581
RefSeq Peptide - NP_963875
swissprot - Q7ZVV4
ZFIN ID - ZDB-GENE-030131-1959
Ensembl - ENSDARG00000016514
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000002399Gallus gallus
 GTF2H2ENSG00000145736Homo sapiens
 Q6P1K8ENSG00000183474Homo sapiens
 Gtf2h2ENSMUSG00000021639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR004595  TFIIH C1-like domain
 IPR007198  Ssl1-like
 IPR012170  TFIIH subunit Ssl1/p44
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0000439 core TFIIH complex IEA
 cellular_componentGO:0005675 holo TFIIH complex IBA
 molecular_functionGO:0003676 nucleic acid binding IBA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr