ENSG00000183474


Homo sapiens

Features
Gene ID: ENSG00000183474
  
Biological name :GTF2H2C
  
Synonyms : GTF2H2C / GTF2H2 family member C / Q6P1K8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: q13.2
Gene start: 69560208
Gene end: 69594723
  
Corresponding Affymetrix probe sets: 215470_at (Human Genome U133 Plus 2.0 Array)   221540_x_at (Human Genome U133 Plus 2.0 Array)   223758_s_at (Human Genome U133 Plus 2.0 Array)   230177_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421312
Ensembl peptide - ENSP00000422907
Ensembl peptide - ENSP00000427486
Ensembl peptide - ENSP00000427456
Ensembl peptide - ENSP00000427393
Ensembl peptide - ENSP00000427224
Ensembl peptide - ENSP00000426434
Ensembl peptide - ENSP00000370105
Ensembl peptide - ENSP00000403328
NCBI entrez gene - 728340     See in Manteia.
NCBI entrez gene - 730394     See in Manteia.
RefSeq - XM_005248590
RefSeq - XM_005248588
RefSeq - XM_011543615
RefSeq - XM_006714688
RefSeq - XM_005248592
RefSeq - NM_001098728
RefSeq - XM_017009804
RefSeq Peptide - NP_001341366
RefSeq Peptide - NP_001092198
swissprot - Q6P1K8
swissprot - D6RJD3
swissprot - D6RAW1
swissprot - D6RGC9
swissprot - D6RID8
swissprot - D6RIT7
Ensembl - ENSG00000183474
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtf2h2ENSDARG00000016514Danio rerio
 ENSGALG00000002399Gallus gallus
 Gtf2h2ENSMUSG00000021639Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GTF2H2 / Q13888 / general transcription factor IIH subunit 2ENSG0000014573699


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR004595  TFIIH C1-like domain
 IPR007198  Ssl1-like
 IPR012170  TFIIH subunit Ssl1/p44
 IPR013087  Zinc finger C2H2-type
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 cellular_componentGO:0000439 core TFIIH complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005675 holo TFIIH complex IBA
 cellular_componentGO:0016607 nuclear speck IDA
 molecular_functionGO:0003676 nucleic acid binding IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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