ENSDARG00000016519


Danio rerio

Features
Gene ID: ENSDARG00000016519
  
Biological name :ctdnep1a
  
Synonyms : ctdnep1a / CTD nuclear envelope phosphatase 1a / Q5U395
  
Possible biological names infered from orthology : CTDNEP1 / CTD nuclear envelope phosphatase 1 / O95476 / Q3TP92
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 24047292
Gene end: 24056796
  
Corresponding Affymetrix probe sets: Dr.7581.1.A1_at (Zebrafish Array)   NM_001007309_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000036009
NCBI entrez gene - 492343     See in Manteia.
RefSeq - NM_001007309
RefSeq Peptide - NP_001007310
swissprot - Q5U395
ZFIN ID - ZDB-GENE-041114-177
Ensembl - ENSDARG00000016519
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O95476ENSG00000175826Homo sapiens
 Q3TP92ENSMUSG00000018559Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ctdnep1b / CTD nuclear envelope phosphatase 1b / O95476* / Q3TP92* / CTDNEP1* / CTD nuclear envelope phosphatase 1*ENSDARG0000003578189
ctdspla / CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like a / CTDSPL* / O15194* / P58465* / CTD small phosphatase like* / CTD small phosphatase-like protein *ENSDARG0000007167333
ctdsp1 / CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 / P58466* / Q9GZU7* / CTD small phosphatase 1* / Carboxy-terminal domain RNA polymerase II polyp...ENSDARG0000004067433
ctdsplb / CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b / CTDSPL* / O15194* / P58465* / CTD small phosphatase like* / CTD small phosphatase-like protein *ENSDARG0000006211633
ctdsp2 / CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 / O14595* / Q8BX07* / CTD small phosphatase 2* / Carboxy-terminal domain RNA polymerase II polyp...ENSDARG0000003610232


Protein motifs (from Interpro)
Interpro ID Name
 IPR004274  FCP1 homology domain
 IPR023214  HAD superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation ISS
 biological_processGO:0006998 nuclear envelope organization ISS
 biological_processGO:0010867 positive regulation of triglyceride biosynthetic process ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031965 nuclear membrane ISS
 cellular_componentGO:0071595 Nem1-Spo7 phosphatase complex ISS
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IBA
 molecular_functionGO:0004722 protein serine/threonine phosphatase activity ISS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
Depolymerisation of the Nuclear Lamina


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000036064 Q561X0 / cnep1r1 / CTD nuclear envelope phosphatase 1 regulatory subunit 1 / Q8N9A8* / Q3UJ81* / Nuclear envelope phosphatase-regulatory subunit 1 *  / complex






 

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