Manteia

ENSDARG00000016674

Danio rerio

Features

Gene ID:	ENSDARG00000016674

Biological name :	si:ch73-166o21.1

Synonyms :	si:ch73-166o21.1

Possible biological names infered from orthology :	Q9UPQ4 / TRIM35 / tripartite motif containing 35

Species:	Danio rerio

Chr. number:	3
Strand:	1
Band:
Gene start:	823084
Gene end:	829433

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000127874 swissprot - X1WCD1 ZFIN ID - ZDB-GENE-131120-76 Ensembl - ENSDARG00000016674

See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
TRIM35	ENSGALG00000016595	Gallus gallus
Q9UPQ4	ENSG00000104228	Homo sapiens
Trim35	ENSMUSG00000022043	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
trim35-20 / tripartite motif containing 35-20 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000070847	60
si:dkey-37m8.11 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000040230	60
trim35-19 / tripartite motif containing 35-19 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099639	59
si:ch1073-324l1.1 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000095913	58
trim35-25 / tripartite motif containing 35-25 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000101055	58
trim35-39 / tripartite motif containing 35-39 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000071241	58
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000058958	58
trim35-22 / tripartite motif containing 35-22 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102264	58
trim35-3 / tripartite motif containing 35-3 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000052255	58
trim35-21 / tripartite motif containing 35-21 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102303	57
si:ch211-175l6.2 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000100721	57
trim35-24 / tripartite motif containing 35-24 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099684	57
si:ch211-12p12.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102219	57
trim35-23 / tripartite motif containing 35-23 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102368	57
si:ch73-106l15.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000111097	57
trim35-33 / tripartite motif containing 35-33 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000060838	56
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000104825	55
trim35-10 / tripartite motif containing 35-10 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000033071	55
CU571315.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000031534	54
trim35-34 / tripartite motif containing 35-34 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000022271	53

Protein motifs (from Interpro)

Interpro ID	Name
IPR000315	B-box-type zinc finger
IPR001841	Zinc finger, RING-type
IPR003613	U box domain
IPR003879	Butyrophylin-like, SPRY domain
IPR006574	SPRY-associated
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
IPR017907	Zinc finger, RING-type, conserved site
IPR027370	RING-type zinc-finger, LisH dimerisation motif

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0016567	protein ubiquitination	IEA
cellular_component	GO:0005622	intracellular	IEA
molecular_function	GO:0004842	ubiquitin-protein transferase activity	IEA
molecular_function	GO:0008270	zinc ion binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr