ENSDARG00000016871


Danio rerio

Features
Gene ID: ENSDARG00000016871
  
Biological name :smarce1
  
Synonyms : smarce1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
  
Possible biological names infered from orthology : O54941 / Q969G3
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 34985895
Gene end: 34995062
  
Corresponding Affymetrix probe sets: Dr.756.1.S1_at (Zebrafish Array)   NM_201298_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000112446
Ensembl peptide - ENSDARP00000146341
Ensembl peptide - ENSDARP00000024751
NCBI entrez gene - 322248     See in Manteia.
RefSeq - XM_005163990
RefSeq - XM_005163989
RefSeq - XM_021469404
RefSeq - NM_201298
RefSeq - XM_009299517
RefSeq Peptide - NP_958455
swissprot - Q803S1
swissprot - F1Q5P8
ZFIN ID - ZDB-GENE-030131-967
Ensembl - ENSDARG00000016871
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCE1ENSGALG00000003882Gallus gallus
 Q969G3ENSG00000073584Homo sapiens
 O54941ENSMUSG00000037935Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR030089  SWI/SNF complex subunit BAF57


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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