ENSGALG00000003882


Gallus gallus

Features
Gene ID: ENSGALG00000003882
  
Biological name :SMARCE1
  
Synonyms : SMARCE1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
  
Possible biological names infered from orthology : O54941 / Q969G3
  
Species: Gallus gallus
  
Chr. number: 27
Strand: -1
Band:
Gene start: 4907122
Gene end: 4921784
  
Corresponding Affymetrix probe sets: Gga.6244.1.S1_at (Chicken Array)   Gga.6244.1.S1_s_at (Chicken Array)   GgaAffx.11797.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043415
Ensembl peptide - ENSGALP00000063714
Ensembl peptide - ENSGALP00000062746
Ensembl peptide - ENSGALP00000061359
Ensembl peptide - ENSGALP00000006164
NCBI entrez gene - 420047     See in Manteia.
RefSeq - XM_015299606
RefSeq - NM_001006335
RefSeq Peptide - NP_001006335
swissprot - A0A1L1RRC3
swissprot - F1NCC9
swissprot - A0A1L1RXY5
swissprot - R4GMF2
swissprot - A0A1L1RV90
Ensembl - ENSGALG00000003882
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarce1ENSDARG00000016871Danio rerio
 Q969G3ENSG00000073584Homo sapiens
 O54941ENSMUSG00000037935Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR030089  SWI/SNF complex subunit BAF57


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006337 nucleosome disassembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0008080 N-acetyltransferase activity IEA
 molecular_functionGO:0016922 nuclear receptor binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr