ENSG00000073584


Homo sapiens

Features
Gene ID: ENSG00000073584
  
Biological name :SMARCE1
  
Synonyms : Q969G3 / SMARCE1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 17
Strand: -1
Band: q21.2
Gene start: 40624962
Gene end: 40648864
  
Corresponding Affymetrix probe sets: 211988_at (Human Genome U133 Plus 2.0 Array)   211989_at (Human Genome U133 Plus 2.0 Array)   229511_at (Human Genome U133 Plus 2.0 Array)   236016_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000462475
Ensembl peptide - ENSP00000493649
Ensembl peptide - ENSP00000493729
Ensembl peptide - ENSP00000493974
Ensembl peptide - ENSP00000494214
Ensembl peptide - ENSP00000494505
Ensembl peptide - ENSP00000494537
Ensembl peptide - ENSP00000494771
Ensembl peptide - ENSP00000494815
Ensembl peptide - ENSP00000495021
Ensembl peptide - ENSP00000495857
Ensembl peptide - ENSP00000496094
Ensembl peptide - ENSP00000496097
Ensembl peptide - ENSP00000496311
Ensembl peptide - ENSP00000496445
Ensembl peptide - ENSP00000496546
Ensembl peptide - ENSP00000496661
Ensembl peptide - ENSP00000323967
Ensembl peptide - ENSP00000367039
Ensembl peptide - ENSP00000392958
Ensembl peptide - ENSP00000411607
Ensembl peptide - ENSP00000445370
Ensembl peptide - ENSP00000462381
Ensembl peptide - ENSP00000462857
Ensembl peptide - ENSP00000463216
Ensembl peptide - ENSP00000463282
Ensembl peptide - ENSP00000463405
Ensembl peptide - ENSP00000464061
Ensembl peptide - ENSP00000464501
Ensembl peptide - ENSP00000464511
Ensembl peptide - ENSP00000466608
NCBI entrez gene - 6605     See in Manteia.
OMIM - 603111
RefSeq - NM_003079
RefSeq Peptide - NP_003070
swissprot - J3QS32
swissprot - K7EMQ8
swissprot - Q969G3
swissprot - H7C048
swissprot - J3KS99
swissprot - J3KT85
swissprot - J3QKS7
swissprot - J3QKX6
swissprot - J3QL66
swissprot - A0A024R1S7
swissprot - B4DGM3
swissprot - J3QR61
Ensembl - ENSG00000073584
  
Related genetic diseases (OMIM): 607174 - {Meningioma, familial, susceptibility to}, 607174
  616938 - Coffin-Siris syndrome 5, 616938

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarce1ENSDARG00000016871Danio rerio
 SMARCE1ENSGALG00000003882Gallus gallus
 O54941ENSMUSG00000037935Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR030089  SWI/SNF complex subunit BAF57
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006337 nucleosome disassembly TAS
 biological_processGO:0006338 chromatin remodeling IDA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II NAS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 cellular_componentGO:0000228 nuclear chromosome TAS
 cellular_componentGO:0000790 nuclear chromatin HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0017053 transcriptional repressor complex IPI
 cellular_componentGO:0032991 protein-containing complex HDA
 cellular_componentGO:0071564 npBAF complex ISS
 cellular_componentGO:0071565 nBAF complex ISS
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding HDA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding HDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding TAS
 molecular_functionGO:0003713 transcription coactivator activity NAS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008080 N-acetyltransferase activity IDA
 molecular_functionGO:0016922 nuclear receptor binding IPI
 molecular_functionGO:0031492 nucleosomal DNA binding HDA
 molecular_functionGO:0047485 protein N-terminus binding IPI


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000126 Hydronephrosis 
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000322 Short philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000457 Flat nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000574 Thick eyebrows 
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 HP:0000632 Lacrimation abnormality 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000776 Diaphragmatic hernia "Diaphragmatic hernia is the result of a developmental defect causing an abnormal opening in the diaphragm, through which abdominal organs (stomach, spleen, liver, and intestines) can protrude into the thoracic cavity. This usually causes respiratory distress in the newborn period." [HPO:curators]
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 HP:0000889 Abnormality of the clavicles "Any abnormality of the clavicles (collar bones)." [HPO:curators]
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 HP:0000965 Cutis marmorata 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001338 Partial agenesis of the corpus callosum "A partial failure of the development of the corpus callosum." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001800 Hypoplastic toenails "Underdeveloped toenails." [HPO:curators]
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 HP:0001810 Dystrophic toenails 
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002217 Slow-growing hair 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
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 HP:0002719 Recurrent infections 
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 HP:0002808 Kyphosis 
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0003298 Spina bifida occulta "The closed form of spina bifida." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005108 Abnormality of the intervertebral disks 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006498 Aplasia/Hypoplasia of the patella "Absence or underdevelopment of the patella." [HPO:curators]
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 HP:0007360 Aplasia/Hypoplasia of the cerebellum 
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 HP:0007598 Bilateral single palmar creases 
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 HP:0008398 Hypoplastic to absent fifth finger- and toenails 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009239 Aplasia/Hypoplasia of the distal phalanx of the 5th finger 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0009928 Ala nasi, thick "Increase in bulk of the ala nasi." [pmid:19152422]
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 HP:0011937 Hypoplastic fifth toenail "Underdeveloped nails of the fifth toes." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100371 Aplasia/Hypoplasia of the distal phalanx of the 5th toe 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
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