ENSDARG00000016994


Danio rerio

Features
Gene ID: ENSDARG00000016994
  
Biological name :ssrp1b
  
Synonyms : ssrp1b / structure specific recognition protein 1b
  
Possible biological names infered from orthology : FACT complex subunit SSRP1 / Q08943 / Q08945 / SSRP1 / structure specific recognition protein 1
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 44710955
Gene end: 44737931
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115037
Ensembl peptide - ENSDARP00000150999
Ensembl peptide - ENSDARP00000118787
Ensembl peptide - ENSDARP00000014032
NCBI entrez gene - 449949     See in Manteia.
swissprot - E7FB41
swissprot - B8A5B7
swissprot - F6NLJ7
ZFIN ID - ZDB-GENE-041008-209
Ensembl - ENSDARG00000016994
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSRP1ENSGALG00000007520Gallus gallus
 SSRP1ENSG00000149136Homo sapiens
 Ssrp1ENSMUSG00000027067Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ssrp1a / structure specific recognition protein 1a / SSRP1* / Q08945* / Q08943* / FACT complex subunit SSRP1 * / structure specific recognition protein 1*ENSDARG0000003739783
tox3 / TOX high mobility group box family member 3 / O15405* / Q80W03*ENSDARG0000007395713
tox4a / TOX high mobility group box family member 4 a / TOX4* / O94842* / TOX high mobility group box family member 4*ENSDARG0000000203113
tox / thymocyte selection-associated high mobility group box / O94900* / Q66JW3* / Thymocyte selection-associated high mobility group box protein TOX *ENSDARG0000003231712
tox4b / TOX high mobility group box family member 4 b / TOX4* / Q8BU11* / O94842* / TOX high mobility group box family member 4*ENSDARG0000010016312
tox2 / TOX high mobility group box family member 2 / Q96NM4*ENSDARG000001000558


Protein motifs (from Interpro)
Interpro ID Name
 IPR000969  Structure-specific recognition protein
 IPR009071  High mobility group box domain
 IPR011993  PH-like domain superfamily
 IPR013719  Domain of unknown function DUF1747
 IPR024954  SSRP1 domain
 IPR035417  FACT complex subunit POB3-like, N-terminal PH domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
Regulation of TP53 Activity through Phosphorylation
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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