ENSGALG00000007520


Gallus gallus

Features
Gene ID: ENSGALG00000007520
  
Biological name :SSRP1
  
Synonyms : FACT complex subunit SSRP1 / SSRP1
  
Possible biological names infered from orthology : Q08943 / Q08945 / structure specific recognition protein 1
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 17030399
Gene end: 17038150
  
Corresponding Affymetrix probe sets: Gga.2985.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000012145
NCBI entrez gene - 396509     See in Manteia.
RefSeq - XM_015286774
RefSeq - NM_001005796
RefSeq - XM_015286772
RefSeq - XM_015286773
RefSeq - XM_015286771
RefSeq Peptide - NP_001005796
swissprot - B6ZLK1
Ensembl - ENSGALG00000007520
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssrp1aENSDARG00000037397Danio rerio
 ssrp1bENSDARG00000016994Danio rerio
 SSRP1ENSG00000149136Homo sapiens
 Ssrp1ENSMUSG00000027067Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TOX3 / O15405* / Q80W03* / TOX high mobility group box family member 3*ENSGALG0000003464913
TOX2* / Q96NM4* / TOX high mobility group box family member 2*ENSGALG0000000310612
TOX / thymocyte selection associated high mobility group box / O94900* / Q66JW3* / Thymocyte selection-associated high mobility group box protein TOX *ENSGALG000000391027


Protein motifs (from Interpro)
Interpro ID Name
 IPR000969  Structure-specific recognition protein
 IPR009071  High mobility group box domain
 IPR011993  PH-like domain superfamily
 IPR013719  Domain of unknown function DUF1747
 IPR024954  SSRP1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
TP53 Regulates Transcription of DNA Repair Genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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