ENSDARG00000017675


Danio rerio

Features
Gene ID: ENSDARG00000017675
  
Biological name :utp4
  
Synonyms : utp4 / UTP4, small subunit processome component
  
Possible biological names infered from orthology : Q8R2N2 / Q969X6
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 14619544
Gene end: 14633308
  
Corresponding Affymetrix probe sets: Dr.7926.1.A1_at (Zebrafish Array)   NM_213282_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000003198
NCBI entrez gene - 406571     See in Manteia.
RefSeq - XM_005169925
RefSeq - NM_213282
RefSeq Peptide - NP_998447
swissprot - Q6P125
ZFIN ID - ZDB-GENE-040426-2466
Ensembl - ENSDARG00000017675
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 UTP4ENSGALG00000000638Gallus gallus
 UTP4ENSG00000141076Homo sapiens
 Utp4ENSMUSG00000041438Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0061007 hepaticobiliary system process IMP
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk increased size , abnormal
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 ZFA:0000123 liver liver decreased size , abnormal
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 ZFA:0000208 gall bladder gall bladder lipid storage disrupted , abnormal
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 ZFA:0005163 bile canaliculus bile canaliculus decreased length , abnormal
bile canaliculus spheroid , abnormal
bile canaliculus decreased branchiness , abnormal
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 ZFA:0005164 bile ductule bile ductule sparse , abnormal
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 ZFA:0009111 hepatocyte hepatocyte rough endoplasmic reticulum increased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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