ENSDARG00000017986


Danio rerio

Features
Gene ID: ENSDARG00000017986
  
Biological name :vps13d
  
Synonyms : vacuolar protein sorting 13 homolog D (S. cerevisiae) / vps13d
  
Possible biological names infered from orthology : Q5THJ4 / vacuolar protein sorting 13D / vacuolar protein sorting 13 homolog D
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 21696560
Gene end: 21763598
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115963
Ensembl peptide - ENSDARP00000046612
Ensembl peptide - ENSDARP00000122356
swissprot - E7F307
swissprot - E9QH42
swissprot - F1QAQ5
ZFIN ID - ZDB-GENE-050912-1
Ensembl - ENSDARG00000017986
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS13DENSGALG00000034777Gallus gallus
 Q5THJ4ENSG00000048707Homo sapiens
 Vps13dENSMUSG00000020220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vps13c / vacuolar protein sorting 13 homolog C (S. cerevisiae) / Q709C8* / Q8BX70* / vacuolar protein sorting 13C* / vacuolar protein sorting 13 homolog C*ENSDARG0000007446515
vps13a / vacuolar protein sorting 13 homolog A (S. cerevisiae) / Q80TY5* / Q96RL7* / VPS13B* / Q5H8C4* / Q7Z7G8* / vacuolar protein sorting 13B* / vacuolar protein sorting 13A* / vacuolar p...ENSDARG0000003922512


Protein motifs (from Interpro)
Interpro ID Name
 IPR000772  Ricin B, lectin domain
 IPR009060  UBA-like superfamily
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR015940  Ubiquitin-associated domain
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr