ENSMUSG00000020220


Mus musculus

Features
Gene ID: ENSMUSG00000020220
  
Biological name :Vps13d
  
Synonyms : vacuolar protein sorting 13D / Vps13d
  
Possible biological names infered from orthology : Q5THJ4 / vacuolar protein sorting 13 homolog D
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: E1
Gene start: 144972622
Gene end: 145195005
  
Corresponding Affymetrix probe sets: 10518226 (MoGene1.0st)   10518228 (MoGene1.0st)   1436331_at (Mouse Genome 430 2.0 Array)   1439187_at (Mouse Genome 430 2.0 Array)   1446855_at (Mouse Genome 430 2.0 Array)   1458195_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000138946
Ensembl peptide - ENSMUSP00000020441
Ensembl peptide - ENSMUSP00000043240
Ensembl peptide - ENSMUSP00000118699
NCBI entrez gene - 230895     See in Manteia.
MGI - MGI:2448530
RefSeq - XM_011250235
RefSeq - NM_001276465
RefSeq - NM_001276502
RefSeq - XM_006538804
RefSeq - XM_006538805
RefSeq - XM_006538806
RefSeq Peptide - NP_001263431
RefSeq Peptide - NP_001263394
swissprot - F6XI52
swissprot - B1ART2
swissprot - V9GX23
swissprot - B1ART1
Ensembl - ENSMUSG00000020220
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps13dENSDARG00000017986Danio rerio
 VPS13DENSGALG00000034777Gallus gallus
 Q5THJ4ENSG00000048707Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BX70 / Vps13c / vacuolar protein sorting 13C / Q709C8* / vacuolar protein sorting 13 homolog C*ENSMUSG0000003528417
Q5H8C4 / Vps13a / vacuolar protein sorting 13A / Q96RL7* / vacuolar protein sorting 13 homolog A*ENSMUSG0000004623014
Q80TY5 / Vps13b / vacuolar protein sorting 13B / Q7Z7G8* / vacuolar protein sorting 13 homolog B*ENSMUSG0000003764611


Protein motifs (from Interpro)
Interpro ID Name
 IPR009060  UBA-like superfamily
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR015940  Ubiquitin-associated domain
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011095 complete embryonic lethality between implantation and placentation "death of all organisms of a given genotype in a population between the point of implantation and the initiation of placentation (Mus: E4.5 to less than E9)" [MGI:csmith]
Show

Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr