ENSG00000048707


Homo sapiens

Features
Gene ID: ENSG00000048707
  
Biological name :VPS13D
  
Synonyms : Q5THJ4 / vacuolar protein sorting 13 homolog D / VPS13D
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p36.22
Gene start: 12230032
Gene end: 12512047
  
Corresponding Affymetrix probe sets: 1557571_at (Human Genome U133 Plus 2.0 Array)   212323_s_at (Human Genome U133 Plus 2.0 Array)   212324_s_at (Human Genome U133 Plus 2.0 Array)   212326_at (Human Genome U133 Plus 2.0 Array)   220221_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494348
Ensembl peptide - ENSP00000496547
Ensembl peptide - ENSP00000011700
Ensembl peptide - ENSP00000441122
Ensembl peptide - ENSP00000473375
Ensembl peptide - ENSP00000478104
Ensembl peptide - ENSP00000482233
NCBI entrez gene - 55187     See in Manteia.
OMIM - 608877
RefSeq - NM_018156
RefSeq - NM_015378
RefSeq Peptide - NP_056193
RefSeq Peptide - NP_060626
swissprot - R4GMW1
swissprot - F5GX56
swissprot - Q5THJ4
swissprot - H3BLS7
Ensembl - ENSG00000048707
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps13dENSDARG00000017986Danio rerio
 VPS13DENSGALG00000034777Gallus gallus
 Vps13dENSMUSG00000020220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q709C8 / VPS13C / vacuolar protein sorting 13 homolog CENSG0000012900317
Q96RL7 / VPS13A / vacuolar protein sorting 13 homolog AENSG0000019796914
Q7Z7G8 / VPS13B / vacuolar protein sorting 13 homolog BENSG0000013254911


Protein motifs (from Interpro)
Interpro ID Name
 IPR009060  UBA-like superfamily
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR015940  Ubiquitin-associated domain
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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