ENSG00000132549


Homo sapiens

Features
Gene ID: ENSG00000132549
  
Biological name :VPS13B
  
Synonyms : Q7Z7G8 / vacuolar protein sorting 13 homolog B / VPS13B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q22.2
Gene start: 99013266
Gene end: 99877580
  
Corresponding Affymetrix probe sets: 1553852_at (Human Genome U133 Plus 2.0 Array)   213243_at (Human Genome U133 Plus 2.0 Array)   220400_at (Human Genome U133 Plus 2.0 Array)   236254_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430900
Ensembl peptide - ENSP00000398472
Ensembl peptide - ENSP00000428809
Ensembl peptide - ENSP00000347281
Ensembl peptide - ENSP00000349685
Ensembl peptide - ENSP00000351346
NCBI entrez gene - 157680     See in Manteia.
OMIM - 607817
RefSeq - XM_017013112
RefSeq - NM_015243
RefSeq - NM_017890
RefSeq - NM_152564
RefSeq - NM_181661
RefSeq - XM_011516861
RefSeq - XM_011516865
RefSeq - XM_011516866
RefSeq - XM_017013109
RefSeq - XM_017013110
RefSeq - XM_017013111
RefSeq - XM_005250800
RefSeq - XM_005250801
RefSeq - XM_006716510
RefSeq - XM_011516848
RefSeq - XM_011516849
RefSeq - XM_011516850
RefSeq - XM_011516851
RefSeq - XM_011516852
RefSeq - XM_011516853
RefSeq - XM_011516854
RefSeq - XM_011516859
RefSeq Peptide - NP_056058
RefSeq Peptide - NP_060360
RefSeq Peptide - NP_689777
RefSeq Peptide - NP_858047
swissprot - Q7Z7G8
swissprot - H0YB72
Ensembl - ENSG00000132549
  
Related genetic diseases (OMIM): 216550 - Cohen syndrome, 216550
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps13aENSDARG00000039225Danio rerio
 VPS13BENSGALG00000041179Gallus gallus
 Q80TY5ENSMUSG00000037646Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q709C8 / VPS13C / vacuolar protein sorting 13 homolog CENSG0000012900312
Q5THJ4 / VPS13D / vacuolar protein sorting 13 homolog DENSG0000004870712
Q96RL7 / VPS13A / vacuolar protein sorting 13 homolog AENSG0000019796911


Protein motifs (from Interpro)
Interpro ID Name
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000212 Gingival hyperplasia 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000297 Facial hypotonia 
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 HP:0000322 Short philtrum 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000444 Beaked nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000505 Impaired vision 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000545 Myopia 
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000574 Thick eyebrows 
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 HP:0000612 Iris coloboma "A `coloboma` (HP:0000589) of the `iris` (FMA:58235)." [HPO:probinson]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000675 Prominent upper central incisors 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001000 Abnormality of skin pigmentation 
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 HP:0001135 Chorioretinal dystrophy 
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 HP:0001166 Arachnodactyly "Abnormally long and slender fingers ("spider fingers")." [HPO:curators]
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 HP:0001182 Tapered fingers 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001518 Low birth weight 
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001572 Macrodontia "Increased size of one or more teeth." [HPO:curators]
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 HP:0001601 Laryngomalacia 
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 HP:0001612 Weak cry 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001634 Mitral valve prolapse 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0001875 Neutropenia 
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 HP:0001882 Leukopenia 
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 HP:0002167 Neurological speech impairment 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002857 Genu valgum 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002943 Thoracic scoliosis 
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 HP:0002967 Cubitus valgus 
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 HP:0003272 Abnormality of the hip "An abnormality of the hip joint or the surrounding anatomic region." [HPO:curators]
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004283 Narrow hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0007074 Thick corpus callosum 
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 HP:0007663 Decreased central vision 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007737 Bony spicule pigmentary retinopathy 
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 HP:0008872 Feeding problems in infancy 
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 HP:0008915 Truncal obesity apparent in childhood 
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 HP:0009804 Reduced number of teeth 
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 HP:0009906 Aplasia/Hypoplasia of the earlobes "Absence or underdevelopment of the ear lobes." [HPO:curators]
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010295 Aplasia/Hypoplasia of the tongue "Absence or underdevelopment of the tongue." [HPO:curators]
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 HP:0010669 Hypoplasia of the zygomatic bone "Underdevelopment of the `zygomatic bone` (FMA:52747)." [HPO:probinson]
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0011308 Slender toe "Digits are disproportionately narrow (reduced girth) for the hand/foot size or build of the individual." [pmid:19125433]
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 HP:0011504 Bull s eye maculopathy "Progressive maculopathy characterized by concentric regions of hyper- and hypo-pigmentation." [DDD:gblack]
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 HP:0100874 Thick hair "Increased density of `hairs` (FMA:53667), i.e., and elevanted number of hairs per unit area." [HPO:probinson]
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 HP:0200046 Cat cry "The presence of a characteristic high-pitched cry that sounds similar to the meowing of a kitten." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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