ENSDARG00000039225


Danio rerio

Features
Gene ID: ENSDARG00000039225
  
Biological name :vps13a
  
Synonyms : vacuolar protein sorting 13 homolog A (S. cerevisiae) / vps13a
  
Possible biological names infered from orthology : Q5H8C4 / Q7Z7G8 / Q80TY5 / Q96RL7 / vacuolar protein sorting 13A / vacuolar protein sorting 13B / vacuolar protein sorting 13 homolog A / vacuolar protein sorting 13 homolog B / VPS13B
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 51992344
Gene end: 52091696
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000102489
NCBI entrez gene - 378837     See in Manteia.
RefSeq - XM_009304309
swissprot - F1QJI4
ZFIN ID - ZDB-GENE-030926-1
Ensembl - ENSDARG00000039225
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000044792Gallus gallus
 ENSGALG00000046093Gallus gallus
 VPS13AENSGALG00000015170Gallus gallus
 VPS13BENSGALG00000041179Gallus gallus
 Q7Z7G8ENSG00000132549Homo sapiens
 Q96RL7ENSG00000197969Homo sapiens
 Q5H8C4ENSMUSG00000046230Mus musculus
 Q80TY5ENSMUSG00000037646Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vps13c / vacuolar protein sorting 13 homolog C (S. cerevisiae) / Q709C8* / Q8BX70* / vacuolar protein sorting 13C* / vacuolar protein sorting 13 homolog C*ENSDARG0000007446542
vps13d / vacuolar protein sorting 13 homolog D (S. cerevisiae) / Q5THJ4* / vacuolar protein sorting 13D* / vacuolar protein sorting 13 homolog D*ENSDARG0000001798615


Protein motifs (from Interpro)
Interpro ID Name
 IPR009543  Vacuolar protein sorting-associated protein 13, SHR-binding domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015412  Autophagy-related, C-terminal
 IPR026847  Vacuolar protein sorting-associated protein 13
 IPR026854  Vacuolar protein sorting-associated protein 13, N-terminal domain
 IPR031642  VPS13, repeated coiled region
 IPR031645  Vacuolar protein sorting-associated protein 13, C-terminal
 IPR031646  Vacuolar protein sorting-associated protein 13, second N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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