ENSDARG00000018270


Danio rerio

Features
Gene ID: ENSDARG00000018270
  
Biological name :olfm1a
  
Synonyms : olfactomedin 1a / olfm1a
  
Possible biological names infered from orthology : O88998 / olfactomedin 1 / OLFM1 / Q99784
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 64732036
Gene end: 64775757
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000008954
Ensembl peptide - ENSDARP00000132015
Ensembl peptide - ENSDARP00000118279
Ensembl peptide - ENSDARP00000115558
Ensembl peptide - ENSDARP00000068440
NCBI entrez gene - 436764     See in Manteia.
RefSeq - NM_001327880
RefSeq - NM_001002491
RefSeq Peptide - NP_001002491
RefSeq Peptide - NP_001314809
swissprot - Q6DGM5
swissprot - A2AWU3
swissprot - A2AWU2
swissprot - A2AWU1
swissprot - A0A0R4IB83
ZFIN ID - ZDB-GENE-040718-194
Ensembl - ENSDARG00000018270
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 OLFM1ENSGALG00000002515Gallus gallus
 OLFM1ENSG00000130558Homo sapiens
 Olfm1ENSMUSG00000026833Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
olfm1b / olfactomedin 1b / OLFM1* / O88998* / Q99784* / olfactomedin 1*ENSDARG0000001405389
olfm2a / olfactomedin 2a / OLFM2* / O95897* / olfactomedin 2*ENSDARG0000007784760
olfm3a / olfactomedin 3a / OLFM3* / P63056* / Q96PB7* / olfactomedin 3*ENSDARG0000007149355
olfm3b / olfactomedin 3b / OLFM3* / P63056* / Q96PB7* / olfactomedin 3*ENSDARG0000003917454
olfm2b / olfactomedin 2b / OLFM2* / O95897* / Q8BM13* / olfactomedin 2*ENSDARG0000010282543
olfml2ba / olfactomedin-like 2Ba / Q68BL8* / Q3V1G4* / OLFML2B* / olfactomedin like 2B* / Olfactomedin-like protein 2B *ENSDARG0000000571626
olfml2bb / olfactomedin-like 2Bb / Q68BL8* / Q3V1G4* / OLFML2B* / olfactomedin like 2B* / Olfactomedin-like protein 2B *ENSDARG0000002148025
olfml2a / olfactomedin-like 2A / Q68BL7* / Q8BHP7*ENSDARG0000000564825
myoc / myocilin / Q99972*ENSDARG0000002178925
si:ch211-173a9.7 / si:ch211-173a9.6 / Olfm5* / OLFM4* / Q3UZZ4* / Q6UX06* / olfactomedin 4* / olfactomedin 5* / Mus musculus olfactomedin 4 (Olfm4), mRNA.*ENSDARG0000008762518
si:ch211-194m7.8ENSDARG0000010494718
Q29RB4 / olfml3b / olfactomedin-like 3b / OLFML3* / Q9NRN5* / olfactomedin like 3*ENSDARG0000006217118
CABZ01074363.1ENSDARG0000011353318
si:ch211-173a9.6 / Olfm5* / OLFM4* / Q3UZZ4* / Q6UX06* / olfactomedin 4* / olfactomedin 5* / Mus musculus olfactomedin 4 (Olfm4), mRNA.*ENSDARG0000004196018
si:ch211-147m6.2 / si:ch211-194m7.3ENSDARG0000007432217
olfml3a / olfactomedin-like 3a / OLFML3* / Q9NRN5* / olfactomedin like 3*ENSDARG0000006185216
si:ch211-194m7.5ENSDARG0000009879916
gldn / gliomedin / Q6ZMI3* / Q8BMF8* / Gliomedin Gliomedin shedded ectodomain*ENSDARG0000006157616
si:ch211-194m7.4ENSDARG0000011188214
si:ch211-147m6.1ENSDARG0000010964814


Protein motifs (from Interpro)
Interpro ID Name
 IPR003112  Olfactomedin-like domain
 IPR011044  Quinoprotein amine dehydrogenase, beta chain-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR022082  Noelin domain
 IPR031217  Noelin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0007409 axonogenesis IMP
 biological_processGO:0060041 retina development in camera-type eye IMP
 biological_processGO:0061075 positive regulation of neural retina development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain degenerate , abnormal
Show

 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer disorganized , abnormal
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 ZFA:0000050 optic vesicle optic vesicle morphology , abnormal
Show

 ZFA:0000107 eye eye discolored , abnormal
eye decreased size , abnormal
Show

 ZFA:0000114 heart heart increased size , abnormal
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 ZFA:0000119 retinal inner nuclear layer retinal inner nuclear layer morphology , abnormal
retinal inner nuclear layer nucleus apoptotic , abnormal
retinal inner nuclear layer cell degenerate , abnormal
Show

 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium discolored , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
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 ZFA:0000368 integument integument rough , abnormal
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 ZFA:0000435 cranial nerve II cranial nerve II axon decreased length , abnormal
cranial nerve II axon defasciculated , abnormal
cranial nerve II axon decreased amount , abnormal
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 ZFA:0000445 optic tectum optic tectum decreased size , abnormal
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 ZFA:0001094 whole organism whole organism colorless , abnormal
whole organism decreased length , abnormal
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 ZFA:0001114 head head flat , abnormal
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 ZFA:0001115 trunk trunk deformed , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton aplastic , abnormal
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 ZFA:0001289 ciliary marginal zone ciliary marginal zone damaged , abnormal
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 ZFA:0001329 retinal inner plexiform layer retinal inner plexiform layer decreased thickness , abnormal
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 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage aplastic , abnormal
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 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer decreased thickness , abnormal
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 ZFA:0001479 lateral line nerve lateral line nerve axon decreased length , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell decreased amount , abnormal
retinal ganglion cell nucleus apoptotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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