ENSDARG00000018787


Danio rerio

Features
Gene ID: ENSDARG00000018787
  
Biological name :efna1b
  
Synonyms : efna1b / ephrin-A1b
  
Possible biological names infered from orthology : EFNA1 / ephrin A1 / Ephrin-A1 Ephrin-A1, secreted form / P20827 / P52793
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 23282655
Gene end: 23298149
  
Corresponding Affymetrix probe sets: NM_200783_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000012577
NCBI entrez gene - 494151     See in Manteia.
RefSeq - NM_200783
RefSeq Peptide - NP_957077
swissprot - O93431
ZFIN ID - ZDB-GENE-041007-5
Ensembl - ENSDARG00000018787
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EFNA1ENSG00000169242Homo sapiens
 Efna1ENSMUSG00000027954Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
efna1a / ephrin-A1a / EFNA1* / P20827* / P52793* / ephrin A1* / Ephrin-A1 Ephrin-A1, secreted form*ENSDARG0000003032661
efna3a / ephrin-A3a / EFNA3* / O08545* / P52797* / ephrin A3* / AL691442.1*ENSDARG0000001467537
efna3b / ephrin-A3b / EFNA3* / O08545* / P52797* / ephrin A3* / AL691442.1*ENSDARG0000009829535
P79727 / efna2a / ephrin-A2a / EFNA2* / O43921* / P52801* / ephrin A2*ENSDARG0000003137233
efna5a / ephrin-A5a / EFNA5* / P52803* / O08543* / ephrin A5*ENSDARG0000008979031
efna2b / ephrin-A2b / EFNA2* / P52801* / O43921* / ephrin A2*ENSDARG0000007974030
si:dkey-246i14.3 / EFNA4* / O08542* / P52798* / ephrin A4*ENSDARG0000009042729


Protein motifs (from Interpro)
Interpro ID Name
 IPR001799  Ephrin receptor-binding domain
 IPR008972  Cupredoxin
 IPR019765  Ephrin, conserved site
 IPR031328  Ephrin
 IPR034252  Ephrin-A ectodomain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IBA
 biological_processGO:0007411 axon guidance IBA
 biological_processGO:0048013 ephrin receptor signaling pathway IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0046658 anchored component of plasma membrane IBA
 molecular_functionGO:0046875 ephrin receptor binding IBA


Pathways (from Reactome)
Pathway description
EPH-Ephrin signaling
EPHA-mediated growth cone collapse
EPH-ephrin mediated repulsion of cells


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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