ENSDARG00000018854


Danio rerio

Features
Gene ID: ENSDARG00000018854
  
Biological name :scaf4b
  
Synonyms : scaf4b / SR-related CTD-associated factor 4b
  
Possible biological names infered from orthology : O95104 / SCAF4 / SR-related CTD associated factor 4
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 42285643
Gene end: 42347209
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000126734
Ensembl peptide - ENSDARP00000090006
NCBI entrez gene - 552961     See in Manteia.
RefSeq - XM_680633
swissprot - R4GE22
swissprot - A0A0A0MPK9
ZFIN ID - ZDB-GENE-050506-42
Ensembl - ENSDARG00000018854
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCAF4ENSGALG00000033965Gallus gallus
 SCAF4ENSG00000156304Homo sapiens
 Scaf4ENSMUSG00000022983Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
scaf4a / SR-related CTD-associated factor 4a / SCAF4* / O95104* / SR-related CTD associated factor 4*ENSDARG0000007709337


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR034369  SCAF4, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr