ENSMUSG00000022983


Mus musculus

Features
Gene ID: ENSMUSG00000022983
  
Biological name :Scaf4
  
Synonyms : Scaf4 / SR-related CTD-associated factor 4
  
Possible biological names infered from orthology : O95104
  
Species: Mus musculus
  
Chr. number: 16
Strand: -1
Band: C3.3
Gene start: 90228957
Gene end: 90284425
  
Corresponding Affymetrix probe sets: 10440770 (MoGene1.0st)   1427333_s_at (Mouse Genome 430 2.0 Array)   1452396_at (Mouse Genome 430 2.0 Array)   1459999_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000044472
Ensembl peptide - ENSMUSP00000132250
NCBI entrez gene - 224432     See in Manteia.
MGI - MGI:2146350
RefSeq - XM_017316972
RefSeq - NM_001346799
RefSeq - NM_001358402
RefSeq - NM_178923
RefSeq - XM_006523011
RefSeq - XM_006523012
RefSeq - XM_006523013
RefSeq - XM_006523014
RefSeq - XM_011246114
RefSeq - XM_006523008
RefSeq - XM_006523009
RefSeq - XM_006523010
RefSeq Peptide - NP_001345331
RefSeq Peptide - NP_849254
RefSeq Peptide - NP_001333728
swissprot - Q6PFF0
swissprot - Q7TSH6
Ensembl - ENSMUSG00000022983
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf4aENSDARG00000077093Danio rerio
 scaf4bENSDARG00000018854Danio rerio
 SCAF4ENSGALG00000033965Gallus gallus
 SCAF4ENSG00000156304Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Scaf8 / Q6DID3 / Protein SCAF8 / Q9UPN6* / SR-related CTD associated factor 8*ENSMUSG0000004620136


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR034369  SCAF4, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr