ENSGALG00000033965


Gallus gallus

Features
Gene ID: ENSGALG00000033965
  
Biological name :SCAF4
  
Synonyms : SCAF4 / splicing factor, arginine/serine-rich 15
  
Possible biological names infered from orthology : O95104 / SR-related CTD associated factor 4
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 104661130
Gene end: 104704725
  
Corresponding Affymetrix probe sets: Gga.17330.1.S1_at (Chicken Array)   GgaAffx.24790.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047662
Ensembl peptide - ENSGALP00000053040
Ensembl peptide - ENSGALP00000051107
NCBI entrez gene - 418492     See in Manteia.
RefSeq - NM_001012822
RefSeq - XM_015299359
RefSeq Peptide - NP_001012840
swissprot - A0A1D5PJP4
swissprot - A0A1D5PEA6
swissprot - A0A1D5P4Q0
Ensembl - ENSGALG00000033965
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf4aENSDARG00000077093Danio rerio
 scaf4bENSDARG00000018854Danio rerio
 SCAF4ENSG00000156304Homo sapiens
 Scaf4ENSMUSG00000022983Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCAF8 / SR-related CTD associated factor 8 / Q6DID3* / Q9UPN6* / Protein SCAF8 *ENSGALG0000001363538


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr