ENSG00000156304


Homo sapiens

Features
Gene ID: ENSG00000156304
  
Biological name :SCAF4
  
Synonyms : O95104 / SCAF4 / SR-related CTD associated factor 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: -1
Band: q22.11
Gene start: 31671033
Gene end: 31732075
  
Corresponding Affymetrix probe sets: 222310_at (Human Genome U133 Plus 2.0 Array)   222311_s_at (Human Genome U133 Plus 2.0 Array)   226082_s_at (Human Genome U133 Plus 2.0 Array)   233753_at (Human Genome U133 Plus 2.0 Array)   243759_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000286835
Ensembl peptide - ENSP00000382703
Ensembl peptide - ENSP00000402377
NCBI entrez gene - 57466     See in Manteia.
OMIM - 616023
RefSeq - XM_017028417
RefSeq - NM_001145444
RefSeq - NM_001145445
RefSeq - NM_020706
RefSeq - XM_006724035
RefSeq - XM_006724036
RefSeq - XM_017028415
RefSeq - XM_017028416
RefSeq - XM_005261017
RefSeq Peptide - NP_001138917
RefSeq Peptide - NP_065757
RefSeq Peptide - NP_001138916
swissprot - O95104
Ensembl - ENSG00000156304
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scaf4aENSDARG00000077093Danio rerio
 scaf4bENSDARG00000018854Danio rerio
 SCAF4ENSGALG00000033965Gallus gallus
 Scaf4ENSMUSG00000022983Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCAF8 / Q9UPN6 / SR-related CTD associated factor 8ENSG0000021307939


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR034369  SCAF4, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr