ENSG00000213079


Homo sapiens

Features
Gene ID: ENSG00000213079
  
Biological name :SCAF8
  
Synonyms : Q9UPN6 / SCAF8 / SR-related CTD associated factor 8
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q25.2
Gene start: 154733325
Gene end: 154834244
  
Corresponding Affymetrix probe sets: 203250_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000413098
Ensembl peptide - ENSP00000356146
Ensembl peptide - ENSP00000356154
NCBI entrez gene - 22828     See in Manteia.
OMIM - 616024
RefSeq - NM_001286194
RefSeq - NM_001286188
RefSeq - NM_001286189
RefSeq - NM_001286199
RefSeq - NM_014892
RefSeq Peptide - NP_001273123
RefSeq Peptide - NP_001273117
RefSeq Peptide - NP_001273118
RefSeq Peptide - NP_001273128
RefSeq Peptide - NP_055707
swissprot - Q9UPN6
swissprot - A0A0A0MT33
Ensembl - ENSG00000213079
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCAF8ENSGALG00000013635Gallus gallus
 Scaf8ENSMUSG00000046201Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SCAF4 / O95104 / SR-related CTD associated factor 4ENSG0000015630433


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR034370  SCAF8, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016363 nuclear matrix ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043175 RNA polymerase core enzyme binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr