ENSMUSG00000046201


Mus musculus

Features
Gene ID: ENSMUSG00000046201
  
Biological name :Scaf8
  
Synonyms : Protein SCAF8 / Q6DID3 / Scaf8
  
Possible biological names infered from orthology : Q9UPN6 / SR-related CTD associated factor 8
  
Species: Mus musculus
  
Chr. number: 17
Strand: 1
Band: A1
Gene start: 3114972
Gene end: 3198855
  
Corresponding Affymetrix probe sets: 10441344 (MoGene1.0st)   1426826_at (Mouse Genome 430 2.0 Array)   1438419_at (Mouse Genome 430 2.0 Array)   1455310_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000076024
NCBI entrez gene - 106583     See in Manteia.
MGI - MGI:1925212
RefSeq - NM_134123
RefSeq Peptide - NP_598884
swissprot - Q6DID3
Ensembl - ENSMUSG00000046201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCAF8ENSGALG00000013635Gallus gallus
 SCAF8ENSG00000213079Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Scaf4 / SR-related CTD-associated factor 4 / O95104*ENSMUSG0000002298335


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS
 IPR034370  SCAF8, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016363 nuclear matrix ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043175 RNA polymerase core enzyme binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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