ENSDARG00000019230


Danio rerio

Features
Gene ID: ENSDARG00000019230
  
Biological name :rpl7a
  
Synonyms : ribosomal protein L7a / rpl7a
  
Possible biological names infered from orthology : Gm14214 / P12970 / P62424 / Rpl7a-ps5
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 33284144
Gene end: 33287691
  
Corresponding Affymetrix probe sets: Dr.25564.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000010055
Ensembl peptide - ENSDARP00000151111
NCBI entrez gene - 337010     See in Manteia.
swissprot - Q6PBZ1
ZFIN ID - ZDB-GENE-031001-9
Ensembl - ENSDARG00000019230
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL7AENSGALG00000003197Gallus gallus
 RPL7AENSG00000148303Homo sapiens
 Gm14214ENSMUSG00000098640Mus musculus
 Rpl7aENSMUSG00000062647Mus musculus
 Rpl7a-ps5ENSMUSG00000071052Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001921  Ribosomal protein L7A/L8
 IPR004037  Ribosomal protein L7Ae conserved site
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR018492  Ribosomal protein L7Ae/L8/Nhp2 family
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr