ENSDARG00000019360


Danio rerio

Features
Gene ID: ENSDARG00000019360
  
Biological name :sec23b
  
Synonyms : sec23b / Sec23 homolog B, COPII coat complex component
  
Possible biological names infered from orthology : Mus musculus SEC23 homolog B, COPII coat complex component (Sec23b), transcript variant 7, mRNA. / Q15437 / Q9D662 / Sec23 homolog B, coat complex II component
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 6779114
Gene end: 6796687
  
Corresponding Affymetrix probe sets: Dr.3854.1.S1_at (Zebrafish Array)   NM_199777_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000119917
Ensembl peptide - ENSDARP00000017982
Ensembl peptide - ENSDARP00000137093
NCBI entrez gene - 327268     See in Manteia.
RefSeq - NM_199777
RefSeq - XM_017356444
RefSeq Peptide - NP_956071
swissprot - F1R7W8
swissprot - A0A0R4ILW9
swissprot - Q6AZ98
ZFIN ID - ZDB-GENE-030131-5479
Ensembl - ENSDARG00000019360
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEC23BENSGALG00000008793Gallus gallus
 Q15437ENSG00000101310Homo sapiens
 Q9D662ENSMUSG00000027429Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q7SZE5 / sec23a / Sec23 homolog A, COPII coat complex component / Q15436* / Q01405* / Protein transport protein Sec23A * / Sec23 homolog A, coat complex II component*ENSDARG0000010423082


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR006895  Zinc finger, Sec23/Sec24-type
 IPR006896  Sec23/Sec24, trunk domain
 IPR006900  Sec23/Sec24, helical domain
 IPR007123  Gelsolin-like domain
 IPR012990  Sec23/Sec24 beta-sandwich
 IPR029006  ADF-H/Gelsolin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0048702 embryonic neurocranium morphogenesis IMP
 biological_processGO:0048821 erythrocyte development IMP
 biological_processGO:0051216 cartilage development IMP
 biological_processGO:0090114 COPII-coated vesicle budding IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0030127 COPII vesicle coat IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch decreased size , abnormal
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 ZFA:0005237 erythroblast erythroblast binucleate , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte immature , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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