ENSDARG00000019752


Danio rerio

Features
Gene ID: ENSDARG00000019752
  
Biological name :rom1a
  
Synonyms : retinal outer segment membrane protein 1a / rom1a
  
Possible biological names infered from orthology : P32958 / Q03395 / retinal outer segment membrane protein 1 / Rod outer segment membrane protein 1 / ROM1
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 67126774
Gene end: 67145505
  
Corresponding Affymetrix probe sets: Dr.12838.1.A1_at (Zebrafish Array)   NM_200794_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000017853
NCBI entrez gene - 393767     See in Manteia.
RefSeq - NM_200794
RefSeq Peptide - NP_957088
swissprot - Q6NYK2
ZFIN ID - ZDB-GENE-040426-1765
Ensembl - ENSDARG00000019752
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ROM1ENSG00000149489Homo sapiens
 Rom1ENSMUSG00000071648Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rom1b / retinal outer segment membrane protein 1b / ROM1* / Q03395* / P32958* / Rod outer segment membrane protein 1 * / retinal outer segment membrane protein 1*ENSDARG0000002692668
prph2a / peripherin 2a (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000003801851
prph2b / peripherin 2b (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000001484050
zmp:0000000545ENSDARG0000001313448
prph2l / peripherin 2, likeENSDARG0000002134546


Protein motifs (from Interpro)
Interpro ID Name
 IPR000830  Peripherin/rom-1
 IPR008952  Tetraspanin, EC2 domain superfamily
 IPR018498  Peripherin/rom-1, conserved site
 IPR018499  Tetraspanin/Peripherin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 biological_processGO:0007601 visual perception IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr