ENSDARG00000014840


Danio rerio

Features
Gene ID: ENSDARG00000014840
  
Biological name :prph2b
  
Synonyms : peripherin 2b (retinal degeneration, slow) / prph2b
  
Possible biological names infered from orthology : P15499 / P23942 / peripherin 2 / PRPH2
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 3252950
Gene end: 3258772
  
Corresponding Affymetrix probe sets: Dr.12204.1.S1_at (Zebrafish Array)   Dr.26436.1.A1_at (Zebrafish Array)   Dr.26436.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000011326
NCBI entrez gene - 559209     See in Manteia.
RefSeq - NM_131567
RefSeq Peptide - NP_571642
swissprot - Q6PBN3
ZFIN ID - ZDB-GENE-000616-9
Ensembl - ENSDARG00000014840
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPH2ENSGALG00000009909Gallus gallus
 PRPH2ENSG00000112619Homo sapiens
 Prph2ENSMUSG00000023978Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prph2a / peripherin 2a (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000003801870
rom1b / retinal outer segment membrane protein 1b / ROM1* / Q03395* / P32958* / Rod outer segment membrane protein 1 * / retinal outer segment membrane protein 1*ENSDARG0000002692654
rom1a / retinal outer segment membrane protein 1a / ROM1* / Q03395* / P32958* / Rod outer segment membrane protein 1 * / retinal outer segment membrane protein 1*ENSDARG0000001975251
zmp:0000000545ENSDARG0000001313451
prph2l / peripherin 2, likeENSDARG0000002134549


Protein motifs (from Interpro)
Interpro ID Name
 IPR000830  Peripherin/rom-1
 IPR008952  Tetraspanin, EC2 domain superfamily
 IPR018498  Peripherin/rom-1, conserved site
 IPR018499  Tetraspanin/Peripherin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 biological_processGO:0007601 visual perception IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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