ENSDARG00000026926


Danio rerio

Features
Gene ID: ENSDARG00000026926
  
Biological name :rom1b
  
Synonyms : retinal outer segment membrane protein 1b / rom1b
  
Possible biological names infered from orthology : P32958 / Q03395 / retinal outer segment membrane protein 1 / Rod outer segment membrane protein 1 / ROM1
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 45675306
Gene end: 45701004
  
Corresponding Affymetrix probe sets: Dr.9906.1.S1_at (Zebrafish Array)   NM_201014_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000096234
Ensembl peptide - ENSDARP00000145799
NCBI entrez gene - 393989     See in Manteia.
RefSeq - NM_201014
RefSeq Peptide - NP_957308
swissprot - F1R4E0
ZFIN ID - ZDB-GENE-040426-1073
Ensembl - ENSDARG00000026926
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ROM1ENSG00000149489Homo sapiens
 Rom1ENSMUSG00000071648Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rom1a / retinal outer segment membrane protein 1a / ROM1* / Q03395* / P32958* / Rod outer segment membrane protein 1 * / retinal outer segment membrane protein 1*ENSDARG0000001975267
prph2b / peripherin 2b (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000001484053
prph2a / peripherin 2a (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000003801851
zmp:0000000545ENSDARG0000001313448
prph2l / peripherin 2, likeENSDARG0000002134546


Protein motifs (from Interpro)
Interpro ID Name
 IPR000830  Peripherin/rom-1
 IPR008952  Tetraspanin, EC2 domain superfamily
 IPR018498  Peripherin/rom-1, conserved site
 IPR018499  Tetraspanin/Peripherin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 biological_processGO:0007601 visual perception IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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