ENSDARG00000020001


Danio rerio

Features
Gene ID: ENSDARG00000020001
  
Biological name :rad23aa
  
Synonyms : rad23aa / RAD23 homolog A, nucleotide excision repair protein a
  
Possible biological names infered from orthology : P54725 / P54726 / RAD23A / RAD23 homolog A, nucleotide excision repair protein
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 52111273
Gene end: 52128425
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000123746
swissprot - F1QHZ1
ZFIN ID - ZDB-GENE-040808-59
Ensembl - ENSDARG00000020001
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAD23AENSGALG00000033532Gallus gallus
 P54725ENSG00000179262Homo sapiens
 P54726ENSMUSG00000003813Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rad23b / RAD23 homolog B, nucleotide excision repair protein / P54727*ENSDARG0000002155060
rad23ab / RAD23 homolog A, nucleotide excision repair protein bENSDARG0000005898457


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR004806  UV excision repair protein Rad23
 IPR006636  Heat shock chaperonin-binding
 IPR009060  UBA-like superfamily
 IPR015360  XPC-binding domain
 IPR015940  Ubiquitin-associated domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003684 damaged DNA binding IEA


Pathways (from Reactome)
Pathway description
Josephin domain DUBs
DNA Damage Recognition in GG-NER
Formation of Incision Complex in GG-NER


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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