ENSDARG00000020028


Danio rerio

Features
Gene ID: ENSDARG00000020028
  
Biological name :cps1
  
Synonyms : carbamoyl-phosphate synthase 1, mitochondrial / cps1
  
Possible biological names infered from orthology : carbamoyl-phosphate synthase 1 / Carbamoyl-phosphate synthase [ammonia], mitochondrial / P31327 / Q8C196
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 39026311
Gene end: 39139722
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000146665
Ensembl peptide - ENSDARP00000013089
Ensembl peptide - ENSDARP00000138019
Ensembl peptide - ENSDARP00000149092
swissprot - F6PBT6
swissprot - A0A0R4IPA8
ZFIN ID - ZDB-GENE-081105-17
Ensembl - ENSDARG00000020028
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPS1ENSGALG00000002944Gallus gallus
 CPS1ENSG00000021826Homo sapiens
 Cps1ENSMUSG00000025991Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cad / carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase / B2RQC6* / P27708* / CAD protein Glutamine-dependent carbamoyl-phosphate synthase Aspartate carbamoyl...ENSDARG0000004189554


Protein motifs (from Interpro)
Interpro ID Name
 IPR002474  Carbamoyl-phosphate synthase small subunit, N-terminal domain
 IPR005479  Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
 IPR005480  Carbamoyl-phosphate synthetase, large subunit oligomerisation domain
 IPR005483  Carbamoyl-phosphate synthase large subunit, CPSase domain
 IPR006274  Carbamoyl-phosphate synthase, small subunit
 IPR006275  Carbamoyl-phosphate synthase, large subunit
 IPR011607  Methylglyoxal synthase-like domain
 IPR011761  ATP-grasp fold
 IPR013815  ATP-grasp fold, subdomain 1
 IPR016185  Pre-ATP-grasp domain superfamily
 IPR017926  Glutamine amidotransferase
 IPR029062  Class I glutamine amidotransferase-like
 IPR035686  Carbamoyl-phosphate synthase small subunit, GATase1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000050 urea cycle IMP
 biological_processGO:0006207 "de novo" pyrimidine nucleobase biosynthetic process IEA
 biological_processGO:0006526 arginine biosynthetic process IBA
 biological_processGO:0006541 glutamine metabolic process IEA
 biological_processGO:0006807 nitrogen compound metabolic process IEA
 biological_processGO:0097272 ammonia homeostasis IMP
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004087 carbamoyl-phosphate synthase (ammonia) activity IMP
 molecular_functionGO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Urea cycle


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr