ENSDARG00000020239


Danio rerio

Features
Gene ID: ENSDARG00000020239
  
Biological name :lpin1
  
Synonyms : lipin 1 / lpin1
  
Possible biological names infered from orthology : Mus musculus lipin 1 (Lpin1), transcript variant 4, mRNA. / Q14693
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 30442518
Gene end: 30470271
  
Corresponding Affymetrix probe sets: Dr.16239.1.A1_at (Zebrafish Array)   Dr.19055.1.A1_at (Zebrafish Array)   Dr.19799.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000129564
Ensembl peptide - ENSDARP00000095032
Ensembl peptide - ENSDARP00000129389
NCBI entrez gene - 799099     See in Manteia.
RefSeq - NM_001044353
RefSeq - XM_005158809
RefSeq Peptide - NP_001037818
swissprot - X1WGN1
swissprot - X1WH54
swissprot - B3DIU0
ZFIN ID - ZDB-GENE-080722-2
Ensembl - ENSDARG00000020239
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LPIN1ENSGALG00000016456Gallus gallus
 LPIN1ENSG00000134324Homo sapiens
 Lpin1ENSMUSG00000020593Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-21k16.1 / LPIN1* / Q14693* / lipin 1* / Mus musculus lipin 1 (Lpin1), transcript variant 4, mRNA.*ENSDARG0000010338057
lpin2 / lipin 2 / Q92539* / Q99PI5* / Mus musculus lipin 2 (Lpin2), transcript variant 3, mRNA.*ENSDARG0000006121450
zgc:123305 / LPIN3* / Q99PI4* / Q9BQK8* / lipin 3* / Phosphatidate phosphatase LPIN3 *ENSDARG0000001556341


Protein motifs (from Interpro)
Interpro ID Name
 IPR007651  Lipin, N-terminal
 IPR013209  Lipin/Ned1/Smp2 (LNS2)
 IPR023214  HAD superfamily
 IPR031315  LNS2/PITP
 IPR031703  Lipin, middle domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009062 fatty acid catabolic process IBA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0019432 triglyceride biosynthetic process IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005741 mitochondrial outer membrane IBA
 molecular_functionGO:0003713 transcription coactivator activity IBA
 molecular_functionGO:0008195 phosphatidate phosphatase activity IBA


Pathways (from Reactome)
Pathway description
Synthesis of PC
Synthesis of PE
Depolymerisation of the Nuclear Lamina
Triglyceride biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr