ENSDARG00000020872


Danio rerio

Features
Gene ID: ENSDARG00000020872
  
Biological name :nfat5a
  
Synonyms : nfat5a / nuclear factor of activated T cells 5a
  
Possible biological names infered from orthology : NFAT5 / nuclear factor of activated T cells 5 / O94916 / Q9WV30
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 37094476
Gene end: 37121335
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000006495
NCBI entrez gene - 334390     See in Manteia.
RefSeq - NM_199895
RefSeq Peptide - NP_956189
swissprot - F1QXN5
ZFIN ID - ZDB-GENE-030131-6322
Ensembl - ENSDARG00000020872
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NFAT5ENSGALG00000039300Gallus gallus
 NFAT5ENSG00000102908Homo sapiens
 Nfat5ENSMUSG00000003847Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nfat5b / nuclear factor of activated T cells 5b / NFAT5* / Q9WV30* / O94916* / nuclear factor of activated T cells 5*ENSDARG0000010255648
nfatc3a / nuclear factor of activated T cells 3a / Q12968* / NFATC3* / nuclear factor of activated T cells 3* / nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3*ENSDARG0000007629714
nfatc1 / nuclear factor of activated T cells 1 / O95644* / nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1*ENSDARG0000003616813
nfatc2a / nuclear factor of activated T cells 2a / NFATC2* / Q13469* / Q60591* / nuclear factor of activated T cells 2* / nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2*ENSDARG0000010092713
nfatc3b / nuclear factor of activated T cells 3bENSDARG0000005172912
nfatc2b / nuclear factor of activated T cells 2b / NFATC2* / Q13469* / nuclear factor of activated T cells 2*ENSDARG0000007997211
nfatc4 / nuclear factor of activated T cells 4 / Q14934* / Q8K120* / Nuclear factor of activated T-cells, cytoplasmic 4 *ENSDARG0000005416211


Protein motifs (from Interpro)
Interpro ID Name
 IPR002909  IPT domain
 IPR008366  Nuclear factor of activated T cells (NFAT)
 IPR008967  p53-like transcription factor, DNA-binding
 IPR011539  Rel homology domain (RHD), DNA-binding domain
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR015646  Nuclear factor of activated T-cells 5
 IPR032397  Rel homology dimerisation domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007507 heart development IMP
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle decreased thickness , abnormal
cardiac ventricle non-contractile , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr