ENSDARG00000021812


Danio rerio

Features
Gene ID: ENSDARG00000021812
  
Biological name :cherp
  
Synonyms : calcium homeostasis endoplasmic reticulum protein / cherp
  
Possible biological names infered from orthology : Mus musculus calcium homeostasis endoplasmic reticulum protein (Cherp), transcript variant 2, mRNA. / Q8IWX8
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 4962370
Gene end: 4990045
  
Corresponding Affymetrix probe sets: Dr.13343.1.S1_at (Zebrafish Array)   NM_200074_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000108124
Ensembl peptide - ENSDARP00000151486
Ensembl peptide - ENSDARP00000146365
Ensembl peptide - ENSDARP00000030934
NCBI entrez gene - 337851     See in Manteia.
RefSeq - NM_200074
RefSeq Peptide - NP_956368
swissprot - B7ZVL5
swissprot - A5WWH4
swissprot - F1RC75
ZFIN ID - ZDB-GENE-040407-1
Ensembl - ENSDARG00000021812
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHERPENSGALG00000003824Gallus gallus
 CHERPENSG00000085872Homo sapiens
 CherpENSMUSG00000052488Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000061  SWAP/Surp
 IPR000467  G-patch domain
 IPR006569  CID domain
 IPR006903  RNA polymerase II-binding domain
 IPR008942  ENTH/VHS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr