ENSDARG00000022418


Danio rerio

Features
Gene ID: ENSDARG00000022418
  
Biological name :faf1
  
Synonyms : faf1 / Fas (TNFRSF6) associated factor 1
  
Possible biological names infered from orthology : Fas associated factor 1 / P54731 / Q9UNN5
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 16274778
Gene end: 16406440
  
Corresponding Affymetrix probe sets: Dr.18567.1.S1_at (Zebrafish Array)   NM_212973_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000037156
NCBI entrez gene - 406243     See in Manteia.
RefSeq - NM_212973
RefSeq Peptide - NP_998138
swissprot - B0UXY9
ZFIN ID - ZDB-GENE-040426-2863
Ensembl - ENSDARG00000022418
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FAF1ENSGALG00000010536Gallus gallus
 FAF1ENSG00000185104Homo sapiens
 Faf1ENSMUSG00000010517Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
faf2 / Fas associated factor family member 2 / Q96CS3*ENSDARG0000005237417


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR001012  UBX domain
 IPR006577  UAS
 IPR012336  Thioredoxin-like fold
 IPR029071  Ubiquitin-like domain superfamily
 IPR033043  FAS-associated factor 1, UBX domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008219 cell death IEA
 biological_processGO:0051216 cartilage development IMP
 biological_processGO:0060037 pharyngeal system development IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000547 mouth mouth open , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage mislocalised ventrally , abnormal
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 ZFA:0001321 neurocranial trabecula neurocranial trabecula decreased length , abnormal
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 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage decreased length , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage medially rotated , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage decreased length , abnormal
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 ZFA:0001423 parachordal cartilage parachordal cartilage morphology , abnormal
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 ZFA:0001458 cranial cartilage cranial cartilage decreased size , abnormal
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 ZFA:0001510 basihyal cartilage basihyal cartilage decreased length , abnormal
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 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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