ENSDARG00000023852


Danio rerio

Features
Gene ID: ENSDARG00000023852
  
Biological name :lsm4
  
Synonyms : lsm4 / LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : Q9Y4Z0
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 6859876
Gene end: 6868474
  
Corresponding Affymetrix probe sets: Dr.11330.1.S1_at (Zebrafish Array)   NM_200696_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135315
Ensembl peptide - ENSDARP00000037344
NCBI entrez gene - 393669     See in Manteia.
RefSeq - NM_200696
RefSeq Peptide - NP_956990
swissprot - A0A0R4IJC4
swissprot - Q6P6E4
ZFIN ID - ZDB-GENE-040426-1652
Ensembl - ENSDARG00000023852
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM4ENSGALG00000003385Gallus gallus
 LSM4ENSG00000130520Homo sapiens
 Lsm4ENSMUSG00000031848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034101  Sm-like protein Lsm4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IBA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0017070 U6 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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