ENSMUSG00000031848


Mus musculus

Features
Gene ID: ENSMUSG00000031848
  
Biological name :Lsm4
  
Synonyms : Lsm4 / LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : Q9Y4Z0
  
Species: Mus musculus
  
Chr. number: 8
Strand: 1
Band: B3.3
Gene start: 70673248
Gene end: 70678752
  
Corresponding Affymetrix probe sets: 10572449 (MoGene1.0st)   1448622_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000034311
Ensembl peptide - ENSMUSP00000147637
Ensembl peptide - ENSMUSP00000147320
Ensembl peptide - ENSMUSP00000121019
NCBI entrez gene - 50783     See in Manteia.
MGI - MGI:1354692
RefSeq - XM_006509706
RefSeq - NM_015816
RefSeq Peptide - NP_056631
swissprot - A0A1B0GRR9
swissprot - D3YTP8
swissprot - Q9CY46
swissprot - A0A1B0GQZ9
Ensembl - ENSMUSG00000031848
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm4ENSDARG00000023852Danio rerio
 LSM4ENSGALG00000003385Gallus gallus
 LSM4ENSG00000130520Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034101  Sm-like protein Lsm4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0043005 neuron projection IEA
 molecular_functionGO:0042731 PH domain binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011096 complete embryonic lethality before somite formation "death of all organisms of a given genotype in a population between the point of implantation and somite formation (Mus: E4.5 to less than E8)" [MGI:csmith]
Show

Allelic Composition: Abcd1tm1Kds/Y,Slc27a2tm1Kds/Slc27a2tm1Kds
Genetic Background: involves: 129S4/SvJae * 129S6/SvEvTac * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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