ENSGALG00000003385


Gallus gallus

Features
Gene ID: ENSGALG00000003385
  
Biological name :LSM4
  
Synonyms : LSM4 / LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
  
Possible biological names infered from orthology : Q9Y4Z0
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 3982169
Gene end: 3987362
  
Corresponding Affymetrix probe sets: Gga.6010.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005338
Ensembl peptide - ENSGALP00000056215
NCBI entrez gene - 420128     See in Manteia.
RefSeq - XM_418245
swissprot - A0A1D5PTG8
swissprot - E1C4H6
Ensembl - ENSGALG00000003385
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm4ENSDARG00000023852Danio rerio
 LSM4ENSG00000130520Homo sapiens
 Lsm4ENSMUSG00000031848Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000956 nuclear-transcribed mRNA catabolic process IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005688 U6 snRNP IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0017070 U6 snRNA binding IBA
 molecular_functionGO:0042731 PH domain binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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