ENSDARG00000024651


Danio rerio

Features
Gene ID: ENSDARG00000024651
  
Biological name :snrpa1
  
Synonyms : small nuclear ribonucleoprotein polypeptide A / snrpa1
  
Possible biological names infered from orthology : Gm45213 / P09661 / P57784
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 9290929
Gene end: 9305581
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000107467
Ensembl peptide - ENSDARP00000093360
NCBI entrez gene - 492511     See in Manteia.
RefSeq - NM_001007383
RefSeq Peptide - NP_001007384
swissprot - F6P9M5
swissprot - F1R300
ZFIN ID - ZDB-GENE-041114-82
Ensembl - ENSDARG00000024651
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPA1ENSGALG00000007170Gallus gallus
 P09661ENSG00000131876Homo sapiens
 Gm45213ENSMUSG00000108793Mus musculus
 P57784ENSMUSG00000030512Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003603  U2A"/phosphoprotein 32 family A, C-terminal
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 molecular_functionGO:0030620 U2 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr