ENSGALG00000007170


Gallus gallus

Features
Gene ID: ENSGALG00000007170
  
Biological name :SNRPA1
  
Synonyms : SNRPA1 / U2 small nuclear ribonucleoprotein A
  
Possible biological names infered from orthology : Gm45213 / P09661 / P57784 / small nuclear ribonucleoprotein polypeptide A
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 17645102
Gene end: 17650113
  
Corresponding Affymetrix probe sets: Gga.10378.1.S1_at (Chicken Array)   Gga.7571.1.S1_at (Chicken Array)   GgaAffx.12146.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060412
Ensembl peptide - ENSGALP00000011598
NCBI entrez gene - 415523     See in Manteia.
RefSeq - NM_001005823
RefSeq Peptide - NP_001005823
swissprot - F1NAC8
swissprot - A0A1L1RNQ6
Ensembl - ENSGALG00000007170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrpa1ENSDARG00000024651Danio rerio
 P09661ENSG00000131876Homo sapiens
 Gm45213ENSMUSG00000108793Mus musculus
 P57784ENSMUSG00000030512Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR003603  U2A"/phosphoprotein 32 family A, C-terminal
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0007283 spermatogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0030620 U2 snRNA binding IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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