ENSDARG00000025269


Danio rerio

Features
Gene ID: ENSDARG00000025269
  
Biological name :pdcd6ip
  
Synonyms : pdcd6ip / programmed cell death 6 interacting protein
  
Possible biological names infered from orthology : Q8WUM4 / Q9WU78
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 42847306
Gene end: 42875185
  
Corresponding Affymetrix probe sets: Dr.2509.1.A1_a_at (Zebrafish Array)   Dr.2509.1.A1_x_at (Zebrafish Array)   Dr.2509.2.A1_at (Zebrafish Array)   NM_213360_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121990
NCBI entrez gene - 406669     See in Manteia.
RefSeq - NM_213360
RefSeq - XM_005159737
RefSeq Peptide - NP_998525
swissprot - B8JLR1
ZFIN ID - ZDB-GENE-040426-2678
Ensembl - ENSDARG00000025269
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDCD6IPENSGALG00000033500Gallus gallus
 Q8WUM4ENSG00000170248Homo sapiens
 Q9WU78ENSMUSG00000032504Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptpn23a / protein tyrosine phosphatase, non-receptor type 23, a / PTPN23* / Q6PB44* / Q9H3S7* / protein tyrosine phosphatase, non-receptor type 23* / Tyrosine-protein phosphatase non-recept...ENSDARG0000007012422
ptpn23b / protein tyrosine phosphatase, non-receptor type 23, bENSDARG0000009868921
rhpn1 / rhophilin, Rho GTPase binding protein 1 / Q61085* / Q8TCX5* / Rhophilin-1 *ENSDARG0000005245411
rhpn2 / rhophilin, Rho GTPase binding protein 2 / Q8BWR8* / Q8IUC4* / Rhophilin-2 *ENSDARG0000001457711


Protein motifs (from Interpro)
Interpro ID Name
 IPR004328  BRO1 domain
 IPR025304  ALIX V-shaped domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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