ENSDARG00000025699


Danio rerio

Features
Gene ID: ENSDARG00000025699
  
Biological name :mbd1b
  
Synonyms : mbd1b / methyl-CpG binding domain protein 1b
  
Possible biological names infered from orthology : MBD1 / methyl-CpG binding domain protein 1 / Mus musculus methyl-CpG binding domain protein 1 (Mbd1), transcript variant 4, mRNA. / Q9UIS9
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 25560072
Gene end: 25576199
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115553
Ensembl peptide - ENSDARP00000031774
Ensembl peptide - ENSDARP00000109727
swissprot - E9QG31
swissprot - F1QDB7
swissprot - F1R9V0
ZFIN ID - ZDB-GENE-030131-6318
Ensembl - ENSDARG00000025699
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MBD1ENSG00000141644Homo sapiens
 Mbd1ENSMUSG00000024561Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
mbd1a / si:dkey-242k1.6 / methyl-CpG binding domain protein 1a / MBD1* / Q9UIS9* / methyl-CpG binding domain protein 1* / Mus musculus methyl-CpG binding domain protein 1 (Mbd1), transcript...ENSDARG0000010120514


Protein motifs (from Interpro)
Interpro ID Name
 IPR001739  Methyl-CpG DNA binding
 IPR002857  Zinc finger, CXXC-type
 IPR016177  DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of transcription cofactors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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