ENSDARG00000025850


Danio rerio

Features
Gene ID: ENSDARG00000025850
  
Biological name :rps21
  
Synonyms : Q7ZUG5 / ribosomal protein S21 / rps21
  
Possible biological names infered from orthology : Mus musculus ribosomal protein S21 (Rps21), transcript variant 5, mRNA. / P63220 / Q9CQR2
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 9220436
Gene end: 9228578
  
Corresponding Affymetrix probe sets: Dr.3447.1.S1_at (Zebrafish Array)   NM_201191_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000031181
Ensembl peptide - ENSDARP00000122013
NCBI entrez gene - 394166     See in Manteia.
RefSeq - NM_201191
RefSeq Peptide - NP_957485
swissprot - Q7ZUG5
ZFIN ID - ZDB-GENE-040426-1102
Ensembl - ENSDARG00000025850
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS21ENSGALG00000005338Gallus gallus
 RPS21ENSG00000171858Homo sapiens
 Rps21ENSMUSG00000039001Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001931  Ribosomal protein S21e
 IPR018279  Ribosomal protein S21e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000461 endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0002181 cytoplasmic translation ISS
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit ISS
 cellular_componentGO:0042788 polysomal ribosome ISS
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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