ENSGALG00000005338


Gallus gallus

Features
Gene ID: ENSGALG00000005338
  
Biological name :RPS21
  
Synonyms : ribosomal protein S21 / RPS21
  
Possible biological names infered from orthology : Mus musculus ribosomal protein S21 (Rps21), transcript variant 5, mRNA. / P63220 / Q9CQR2
  
Species: Gallus gallus
  
Chr. number: 20
Strand: -1
Band:
Gene start: 8125418
Gene end: 8130006
  
Corresponding Affymetrix probe sets: Gga.5481.1.S1_a_at (Chicken Array)   Gga.5481.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000033411
Ensembl peptide - ENSGALP00000061038
Ensembl peptide - ENSGALP00000064531
NCBI entrez gene - 419228     See in Manteia.
RefSeq - XM_417405
swissprot - A0A1L1RQH1
swissprot - E1BSJ2
Ensembl - ENSGALG00000005338
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps21ENSDARG00000025850Danio rerio
 RPS21ENSG00000171858Homo sapiens
 Rps21ENSMUSG00000039001Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001931  Ribosomal protein S21e
 IPR018279  Ribosomal protein S21e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000461 endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0002181 cytoplasmic translation IEA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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